"my agility should be 35 but its 34.. and given that i put 25 pts into it, this should be impossible."

Actually, there is a vampire (in the dark cave) which can permanently steal 1 to 4 stat points (though there are other bonuses which more than make up for that).
I don't know if alcohol or something else can temporarily drop agility.

If it really is a bug, you can use iZakaroN's SaveEditor to correct it.