I did find a way to fix it and I need to thank David (From larian support) for Emailing me, now the Dual Core Optimizer may have been what fixed it (I had an old version of it) but it gave me an idea so I went into my config file for DKS and changed the multi-core line to 0 which seems to have fixed it, I just finished Ego Draconis and am playing FOV... I have to say FOV is awesome and has a very twisted sense of humor!
<!-- UseMultiCore: When set to 0, the game runs on a single core. This will cause a lower framerate but could prevent some deadlock issues. -->
<!-- When set to 1, the game runs in its normal configuration, utilizing multiple cores. -->
<!-- DEFAULT = 1 -->
<UseMultiCore>0</UseMultiCore>
