Now whenever I use a waypoint shrine within cyseal, my party doesn't follow. This happened after I used the waypoint in black cove. When I want to waypoint to black cove, my party does follow.
I've found that to be an intermittent problem since the beginning of the game: I'm not sure whether or not there's a specific trigger, but in my game, my followers wouldn't come after me to begin with, then did so for most of the duration of the game, and then at the end they didn't.
A particularly irritating problem I've had is that the game often ctds when using bows in combat. Though I'm left wondering if it's a particular bow (the Frightening Shortbow, I think) as it never seemed to happen when using the others. Might just be coincidence, though.