I posted the same list on the Steam forums for this game, but it has better luck getting noticed by the devs here.

1. A pause function for the RTS battles.

2. Auto-cast option for special abilites during RTS battles.

3. The ability to see exactly what units are on board a transport in the strategic map.

4. **This is more of a glitch that needs fixing** The ability to fill more than 5 spaces on transports if they are stacked together on the strategic map. If you have two transports stacked together (which seems to happen when there are around 10 or more transports in a map section), you can still only fill up to 5 spaces on one transport, the other transport will be empty. If you move both stacked transports to a new map section and choose to move only one, the empty transport will always be moved, not the full one.