I can confirm the previous post appears to have fixed the issue I was seeing. Don't leave a default unassigned - put a placeholder (, . ; did not appear to conflict/worked for me).
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I also rebound camera rotate to Q and E. I had simply unbound 'GM Master Sheet' (default Q) and (default E) both 'Toggle Creatures & Items Panel' and 'Toggle Equipment'.
When closing and re-opening the application I saw my new bindings to camera rotation (Q E) stayed, while, specifically, the two default E bindings would return; when I pressed E, the camera would rotate while also opening the inventory and I would see the hotkey was both bound to rotate and the default E settings.
After filling those blanks with 'something', it appears to no longer reset when I load the game again.
Last edited by foob; 03/10/17 12:51 AM.