Hey Guava527, thanks for making this!

As someone who currently has way too many projects, there are a few features I think would be really nice to have:

An option to specify the "root directory" for the git endpoint.
Inside that root directory, individual mod projects are stored in folders labeled by the mod name.
The ability to add multiple projects to "track", which then populates a list on the pipe tab, with the ability to tick (via checkbox) which projects pipe in/out runs on.
A "check all" and "uncheck all" button to quickly select which projects to pipe.

And, optionally:
Pipe Tool hosted on Github, for easier requests/bug reports/forks/etc (if not already - I didn't see a link). opa

I currently have about 16 mod projects (not all active), so a few more features would make life easier when it comes to backing up everything.

I'm currently doing the junction thing and hosting my source on Github, but I'd like an easier way to back up my assets/effects/etc, and Pipe Tool looks like it could be an easier way.

Thanks again.