I had a similar issue. Upon escaping the Nautiloid I ended up on the beach; no cut scene or anything. Like Sorrowfox above I encountered no enemies (other than the dying Mind Flayer I could not interact with) or life. I could see blood splotches all over, but no sign of what made them. Eventually my character got stuck on some terrain and I had to camp to free him. Once I camped and came back, the cust scene of me being thrown from the Nautiloid played and the beach, dead bodies, and enemies all loaded in and played thru fine.
Some tweaking of that scene is definitely needed.
