Still not fixed for me with Patch 5. I'm left-handed, so I need to change the keyboard layout to compensate. I use the keypad for some things. Every time I play I have to reset all the keypad keys - it remembers 2 of them but then ignores them when it restores it to default and I have to clear them all again.

Even more strange, is the file with the key bindings located in PlayerProfiles/profile/: inputconfig_p1.json
Change the file to make it Read-Only - the game ignores the Read_Only status and still over-writes the file when I start up the game, so I have reset each time I play or reload a save.

I've email/complained several times...