If it was me, and I know almost bugger all about this sort of thing so feel free to ignore me, I'd uninstall the mods anyway, just to make absolutely sure. I know it's a total pain, and it would annoy me too, but the game is still in the early stages of being patched/optimized etc and mods can make so many unexpected things go squirly.
You don't have that many and adding them back gradually wouldn't take too long.
Hope you find a solution.
